PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna21782.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family NF-YB
Protein Properties Length: 161aa    MW: 17751 Da    PI: 7.4202
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna21782.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB45.32.2e-148104595
                    NF-YB   5 drflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 
                               ++lP + v r++k  l + +k      + k+a     e +  fi ++++ a+d c+  kr+tin+dd++ al ++ f ++v plk
  mrna21782.1-v1.0-hybrid   8 TAELPKTIVRRVVKDKLSQCSKadadlnVHKEALTAFSESARIFIHYLSATANDICRGSKRQTINADDVFKALEDIEFPEFVGPLK 93 
                              57899999999999999876653333336788888999************************************************ PP

                    NF-YB  85 vylkkyreleg 95 
                              + l++ re ++
  mrna21782.1-v1.0-hybrid  94 ASLEELREKNA 104
                              *******9765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.7E-326148IPR009072Histone-fold
PfamPF008082.4E-9980IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.82E-2210123IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MEKVVAETAE LPKTIVRRVV KDKLSQCSKA DADLNVHKEA LTAFSESARI FIHYLSATAN  60
DICRGSKRQT INADDVFKAL EDIEFPEFVG PLKASLEELR EKNAGKKAGT SKAKEAKTKE  120
AKTKEAKKKK RKLEEPPPKQ EEENQDEDGS DGTSESSSKE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126131KKKKRK
2127132KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004291600.11e-111PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA9PCR22e-60A9PCR2_POPTR; CCAAT-box binding transcription factor subunit HAP3-related family protein
STRINGPOPTR_0009s16500.15e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-40nuclear factor Y, subunit B11